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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138468717_138480822_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138468717 - 138480822
Intron Length:
12106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
AATTCTCCATCT
Flanking Amino Acid:
LNVRSGHKTTGIHGSSFLLD
Intron Amino Acid Position:
2183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
82.7
0.73
0.7
81
31
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
46.5
-0.1
2
68.86
41.7

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293