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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138481231_138492632_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138481231 - 138492632
Intron Length:
11402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTCTCCACT
Flanking Amino Acid:
VQIKDFLNGPADINVDISKP
Intron Amino Acid Position:
2047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.9
0.81
0.7
80.4
25.1
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
57.9
0.33
2
79.4
43

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293