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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138536484_138537492_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138536484 - 138537492
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGATATCTAATA
Flanking Amino Acid:
IDTPENLHPEEILVCGHSLE
Intron Amino Acid Position:
1719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
1
88.3
26.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.8
0.69
0.7
76.7
25.5
Minor 5ss
35.7
-1.6
2.6
43.1
43.8
Minor BPS
49.5
-0
1.8
62.87
37

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293