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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138537620_138548023_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138537620 - 138548023
Intron Length:
10404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATC
Flanking Amino Acid:
NPALEWNMASSIKRHQERRA
Intron Amino Acid Position:
1676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
59.1
0.27
1.6
67.67
38.3

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293