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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138548228_138573882_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138548228 - 138573882
Intron Length:
25655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTGTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTTGTATT
Flanking Amino Acid:
SRAVLRKDIYQRALNLGILR
Intron Amino Acid Position:
1608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.8
0.83
0.8
81
35.3
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
56.3
0.28
1.7
79.72
37

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293