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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138581181_138582678_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138581181 - 138582678
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAGAT
U12 Branch Point Sequence:
ATAAGGTGAACA
Flanking Amino Acid:
ESFNIDHYRNRPGEGWQSGH
Intron Amino Acid Position:
1388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
62.6
0.31
1
58.7
38.1
Major PPT
85.1
0.79
0.8
76.9
37.4
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
42.3
-0.5
2.4
56.52
42.1

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293