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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138611442_138618892_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138611442 - 138618892
Intron Length:
7451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CTTTCCTGACTT
Flanking Amino Acid:
WNAVKRLTLQLEVQSCCVFL
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
62.4
0.47
1.8
80.5
41.8

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293