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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138699662_138742707_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138699662 - 138742707
Intron Length:
43046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
ALLNEVFQYSGVKSKNPLPT
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.1
0.77
0.8
85.9
26.9
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293