About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138773574_138776170_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
138773574 - 138776170
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTGATGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATGTTTGACT
Flanking Amino Acid:
FEENMNRNDEEAYFFNCGEN
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
59.3
0.21
1.2
60.1
39.6
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
65.9
0.58
1.8
83.55
37.7

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293