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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138776294_138776629_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138776294 - 138776629
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AATTCTTCAAAA
Flanking Amino Acid:
CWEQEGTTVEVLMKGERFFD
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
66.5
0.37
0.7
58.1
26.9
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
59.7
0.3
1.6
68.94
36.7

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293