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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138793431_138794429_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138793431 - 138794429
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
FWDRAFMDISATDLVLRKMI
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80
0.68
1
81.5
27.8
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293