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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138794598_138799273_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138794598 - 138799273
Intron Length:
4676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTCCTTATAACT
Flanking Amino Acid:
SASPDPDLPPGYVQSLIRRV
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77.9
38.6
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
39.7
-1.2
3.2
56.4
48
Minor BPS
59.7
0.38
1.6
77.66
38.8

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293