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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138833171_138838120_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138833171 - 138838120
Intron Length:
4950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AGTTAATTGATC
Flanking Amino Acid:
LELKLDVLEQELKLPFTFLS
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
72.6
0.51
1
73.5
41.9
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
49.7
-0
1.8
63.12
35.8

Associated Gene:

Gene:
VPS13B
Ensembl Gene ID:
ENSAPLG00000014920
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029347
138383975 - 138838267
454293
ENSAPLT00000015615
138383975 - 138838267
454293