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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138936047_138936358_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138936047 - 138936358
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGAAAG
5'SS Class:
major
3'SS Sequence:
TCTCCCCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCTATTTAATT
Flanking Amino Acid:
EELKRKKIPYVVKYYGS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
65.8
39.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75
0.56
0.9
66.3
34.7
Minor 5ss
31.6
-2.1
2.8
38.2
39.4
Minor BPS
67.4
0.62
1.4
78.91
37.7

Associated Gene:

Gene:
STK3
Ensembl Gene ID:
ENSAPLG00000014803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015444
138936024 - 139059795
123772