Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138936474_138990861_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

138936474 - 138990861

Intron Length:

54388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTTATCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTGTTTAACT

Flanking Amino Acid:

SDIIRLRNKTAIFMIPTNPP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

84.3

29.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

76.6

0.6

0.9

40.6

Minor 5ss

41.2

-1

45.5

Minor BPS

78.9

0.98

1.6

95.57

31.2

Associated Gene:

Gene:

STK3

Ensembl Gene ID:

ENSAPLG00000014803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015444

138936024 - 139059795

123772