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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139013248_139059636_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139013248 - 139059636
Intron Length:
46389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GGTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
GGTTCTTTTACA
Flanking Amino Acid:
KVPQDGDFDFLKNLSLEELQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.6
0.73
0.9
76
38
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
65.9
0.49
1.6
72.95
38.4

Associated Gene:

Gene:
STK3
Ensembl Gene ID:
ENSAPLG00000014803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015444
138936024 - 139059795
123772