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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139124830_139125148_F

Intron Information:

Intron Rank:
126932
Intron Class:
major
Intron Phase:
Intron Coordinates:
139124830 - 139125148
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CCCGTGCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCGTTTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.5
0.37
0.9
56.5
38.8
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
63.3
0.4
1.4
66.43
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035566
139124695 - 139125767
1073