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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139125256_139125358_F

Intron Information:

Intron Rank:
126933
Intron Class:
major
Intron Phase:
Intron Coordinates:
139125256 - 139125358
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
79.2
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
34.2
-1.8
2.8
42
44.5
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018387
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035566
139124695 - 139125767
1073