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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139148801_139150529_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139148801 - 139150529
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATAATTAATT
Flanking Amino Acid:
FLISVSLSIQKCAHLRLACQ
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.4
0.57
0.9
66.7
44.1
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
59.9
0.39
1.8
76.87
38.9

Associated Gene:

Gene:
NIPAL2
Ensembl Gene ID:
ENSAPLG00000014788
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015417
139132591 - 139178681
46091