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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139150702_139160223_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139150702 - 139160223
Intron Length:
9522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTCTTTATAATT
Flanking Amino Acid:
VAPLGCVSVIGTAVISVLFL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.8
0.58
0.9
67.1
39.5
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
57.4
0.31
1.6
72.64
38.9

Associated Gene:

Gene:
NIPAL2
Ensembl Gene ID:
ENSAPLG00000014788
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015417
139132591 - 139178681
46091