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Intron Name: Anas_platyrhynchos_platyrhynchos_2_139172600_139174971_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139172600 - 139174971

Intron Length:

2372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GCTTGTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATAAC

U12 Branch Point Sequence:

GGTGCAATAACG

Flanking Amino Acid:

LMATSCVFQVKFLNQAMHLY

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

75.1

35.1

Major BPS

57.8

0.19

1.1

59.6

32.6

Major PPT

81.6

0.71

0.9

72.6

42.4

Minor 5ss

33.7

-1.9

3.2

40.4

Minor BPS

-0.3

55.57

44.8

Associated Gene:

Gene:

NIPAL2

Ensembl Gene ID:

ENSAPLG00000014788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040646

139161308 - 139178681

17374

ENSAPLT00000015417

139132591 - 139178681

46091