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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139203983_139204755_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139203983 - 139204755
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
ETLTRGFVVLRSKKLLMQVA
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.1
0.45
0.9
66.3
38.7
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432