Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139207287_139208608_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139207287 - 139208608

Intron Length:

1322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTTAT

U12 Branch Point Sequence:

AGGTTACTAACT

Flanking Amino Acid:

NVTENKISEQDLNQMRAQLL

Intron Amino Acid Position:

562

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

1.1

81.4

32.7

Major BPS

74.8

0.62

0.9

63.7

35.1

Major PPT

86.9

0.83

0.6

84.9

22.7

Minor 5ss

41.6

-0.9

2.6

43.3

Minor BPS

49.2

0.02

1.9

69.02

41.3

Associated Gene:

Gene:

POP1

Ensembl Gene ID:

ENSAPLG00000014418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015047

139203292 - 139225723

22432