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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139208725_139215476_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139208725 - 139215476
Intron Length:
6752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
TTTTGCTTGAAG
Flanking Amino Acid:
KAMPDPEKYQDNDKVRQLYL
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
87.8
0.85
0.6
84.4
23.4
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
60.2
0.18
2
71.8
41.2

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432