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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139217571_139217689_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139217571 - 139217689
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
TCAGGTGAAACT
Flanking Amino Acid:
WISQTTGVVISDRTMEILRY
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
86.5
0.82
0.7
84.3
23.5
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
38
-0.8
2.4
55.24
47.3

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432