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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139217941_139218558_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139217941 - 139218558
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
GACTTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATCCTCCTAATC
Flanking Amino Acid:
WIWIHPALKQDILNELKEIF
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
75.9
0.58
0.8
73.8
36.5
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
52.5
0.06
1.6
62.45
37

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432