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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139218735_139219047_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139218735 - 139219047
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAAGT
Flanking Amino Acid:
QLARICSVDTGLTFRVARCL
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.6
88.5
21
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
73.4
0.81
1.9
93.33
34.8

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432