Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139219136_139219692_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139219136 - 139219692

Intron Length:

557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCACGT

5'SS Class:

major

3'SS Sequence:

CCTGTTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTATTCTCATTT

Flanking Amino Acid:

RAMTNHCLLQDLSYYCCLEL

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.2

57.5

47.2

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

0.65

0.9

75.9

Minor 5ss

38.2

-1.3

3.4

57.6

46.5

Minor BPS

56.5

0.28

1.8

76.65

40.3

Associated Gene:

Gene:

POP1

Ensembl Gene ID:

ENSAPLG00000014418

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015047

139203292 - 139225723

22432