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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139219942_139222489_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139219942 - 139222489
Intron Length:
2548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAGCA
5'SS Class:
major
3'SS Sequence:
CTTTTAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCTTTTAAAA
Flanking Amino Acid:
RRLQEIARKEAEKAVHQKKE
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.8
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.5
0.42
1
64.1
39.7
Minor 5ss
36.2
-1.6
3.4
48.1
47.6
Minor BPS
63.1
0.41
1.4
69.31
37

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432