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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139223716_139225602_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139223716 - 139225602
Intron Length:
1887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
CTAAACCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAACC
Flanking Amino Acid:
AGGPRPCPPPGDFHSEQQYQ
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
63.1
39.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.4
0.41
0.9
63
38.9
Minor 5ss
30.9
-2.2
3.4
42.7
44.4
Minor BPS
63.7
0.41
1.7
70.71
40.9

Associated Gene:

Gene:
POP1
Ensembl Gene ID:
ENSAPLG00000014418
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015047
139203292 - 139225723
22432