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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139226091_139228823_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139226091 - 139228823
Intron Length:
2733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCCCC
5'SS Class:
major
3'SS Sequence:
CTTCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
AAGCTTTCAACA
Flanking Amino Acid:
AKAPAAMGPYSQAVLVDRTM
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
58.5
40.7
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
86.3
0.82
0.8
83.9
31.1
Minor 5ss
39.8
-1.1
2.9
51.2
45.5
Minor BPS
49.6
-0
1.5
56.31
36.5

Associated Gene:

Gene:
RIDA
Ensembl Gene ID:
ENSAPLG00000014330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027836
139226026 - 139232931
6906