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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139227319_139228823_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139227319 - 139228823
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGGAA
5'SS Class:
major
3'SS Sequence:
CTTCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
AAGCTTTCAACA
Flanking Amino Acid:
DSVRLLLVWQSQAVLVDRTM
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
35.9
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
86.3
0.82
0.8
83.9
31.1
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
49.6
-0
1.5
56.31
36.5

Associated Gene:

Gene:
RIDA
Ensembl Gene ID:
ENSAPLG00000014330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014945
139227241 - 139232349
5109