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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139231867_139232249_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139231867 - 139232249
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTTCTTTATT
Flanking Amino Acid:
AAYQVAALPKGARVEIEAIA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.7
0.56
0.9
68.1
37.6
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
69.3
0.69
1.6
84.19
36.4

Associated Gene:

Gene:
RIDA
Ensembl Gene ID:
ENSAPLG00000014330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014945
139227241 - 139232349
5109
ENSAPLT00000027836
139226026 - 139232931
6906