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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139232350_139232730_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
139232350 - 139232730
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTTCT
5'SS Class:
major
3'SS Sequence:
GCTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AACTTCTAAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.5
35.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.8
0.81
0.8
79.7
32.4
Minor 5ss
36.4
-1.5
3.1
51
45.4
Minor BPS
62.5
0.47
1.7
74.86
42

Associated Gene:

Gene:
RIDA
Ensembl Gene ID:
ENSAPLG00000014330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027836
139226026 - 139232931
6906