Gene Search

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

139256269 - 139257616

Intron Length:

1348

Sequence Information:

Terminal Dinucleotides:

AT-AC

5'SS Sequence:

GAT|ATATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

AACTTTTGCCTAC|T

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

CTTTCCTTAACT

Flanking Amino Acid:

TSEVRKLTQRLEEMTKRMED

Intron Amino Acid Position:

1048

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

33.9

-1

3.4

55.3

44.3

Major BPS

79.4

0.73

80.1

Major PPT

38.2

-0.6

3.1

50.4

Minor 5ss

96.4

1.54

0.8

90.9

28.7

Minor BPS

93.1

1.44

0.8

100

28.8

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020971

139254171 - 139335360

81190

ENSAPLT00000035971

139254171 - 139335360

81190

ENSAPLT00000019094

139254171 - 139335360

81190

ENSAPLT00000031224

139254171 - 139335360

81190

ENSAPLT00000045349

139254171 - 139335360

81190

ENSAPLT00000014656

139254171 - 139300283

46113

ENSAPLT00000025829

139254171 - 139335360

81190

ENSAPLT00000040671

139254171 - 139335360

81190

ENSAPLT00000025401

139254171 - 139335360

81190

ENSAPLT00000040029

139254171 - 139335360

81190

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139256269_139257616_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: