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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139257704_139257948_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139257704 - 139257948
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CAGCATTTAAGT
Flanking Amino Acid:
DSHTHSTRTTAKDKDQCKCE
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
35.2
-1.7
2.7
43
43.8
Minor BPS
47.1
-0.1
1.8
59.14
44.1

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190