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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139258060_139258639_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139258060 - 139258639
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTGT
5'SS Class:
major
3'SS Sequence:
GGGTTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CATTTTTAGACT
Flanking Amino Acid:
RLRKTGPQSSGPESSTITIT
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.3
61.8
45.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.3
0.52
1
66.3
40.8
Minor 5ss
40.5
-1.1
3.2
56.7
47.5
Minor BPS
54
0.21
1.7
70.55
41.2

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000031224
139254171 - 139335360
81190