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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139262978_139265657_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139262978 - 139265657
Intron Length:
2680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTTTTGAACC
Flanking Amino Acid:
SGWAARAKQTGIIIYAIGIG
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
80
0.75
1
78.6
31
Major PPT
66.6
0.37
1
59.4
40.8
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
67.1
0.52
1.4
74.34
36.6

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190