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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139262978_139267857_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139262978 - 139267857
Intron Length:
4880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
CTTTTGAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTTTTGAACC
Flanking Amino Acid:
VLKEDQKTCRSIIIYAIGIG
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
80
0.75
1
78.6
31
Major PPT
66.6
0.37
1
59.4
40.8
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
67.1
0.52
1.4
74.34
36.6

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025401
139254171 - 139335360
81190