About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139267981_139268143_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139267981 - 139268143
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAATT
Flanking Amino Acid:
VLRQDGKTCRSKDVCKSVAH
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.3
0.52
0.9
68.6
36.8
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
53.2
0.18
1.5
68.14
36.8

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190