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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139267981_139268410_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139267981 - 139268410
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CAATTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATATTTCAATT
Flanking Amino Acid:
ILRRDRKTCRSKDVCKSVAH
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
66
40.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.3
0.52
0.9
68.6
36.8
Minor 5ss
31.9
-2.1
2.7
33.3
35.4
Minor BPS
53.2
0.18
1.5
68.14
36.8

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031224
139254171 - 139335360
81190