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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139268270_139268410_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139268270 - 139268410
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TAACAATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTCTCTTAACA
Flanking Amino Acid:
ILRRDRKTCRNKDLCKSIDH
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
66
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67
0.38
1
62.6
42.5
Minor 5ss
31.9
-2.1
2.7
33.3
35.4
Minor BPS
79.5
0.92
1.1
83.19
30.2

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190