Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139268534 - 139268755

Intron Length:

222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TCATTATTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTATTC

Flanking Amino Acid:

VLKEDGKTCKSKNICKTVNH

Intron Amino Acid Position:

645

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

33.2

Major BPS

100

1.24

0.5

100

Major PPT

77.4

0.62

0.9

69.5

40.5

Minor 5ss

43.6

-0.7

2.9

58.5

40.3

Minor BPS

65.1

0.45

1.8

79.59

35.6

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025401

139254171 - 139335360

81190

ENSAPLT00000040029

139254171 - 139335360

81190

ENSAPLT00000020971

139254171 - 139335360

81190

ENSAPLT00000035971

139254171 - 139335360

81190

ENSAPLT00000019094

139254171 - 139335360

81190

ENSAPLT00000031224

139254171 - 139335360

81190

ENSAPLT00000045349

139254171 - 139335360

81190

ENSAPLT00000014656

139254171 - 139300283

46113

ENSAPLT00000025829

139254171 - 139335360

81190

ENSAPLT00000040671

139254171 - 139335360

81190

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139268534_139268755_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: