Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139269180 - 139269269

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

TACATGTTAACT

Flanking Amino Acid:

LLREDGKTCKNKDVCNSINH

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

84.9

0.78

0.8

79.6

32.4

Minor 5ss

37.8

-1.4

2.7

46.1

Minor BPS

54.4

0.22

2.1

73.25

43.6

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025401

139254171 - 139335360

81190

ENSAPLT00000040029

139254171 - 139335360

81190

ENSAPLT00000020971

139254171 - 139335360

81190

ENSAPLT00000035971

139254171 - 139335360

81190

ENSAPLT00000019094

139254171 - 139335360

81190

ENSAPLT00000031224

139254171 - 139335360

81190

ENSAPLT00000045349

139254171 - 139335360

81190

ENSAPLT00000014656

139254171 - 139300283

46113

ENSAPLT00000025829

139254171 - 139335360

81190

ENSAPLT00000040671

139254171 - 139335360

81190

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139269180_139269269_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: