Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139269393_139273910_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139269393 - 139273910

Intron Length:

4518

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CATCTGTTCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

AACATATTAACT

Flanking Amino Acid:

VLRQDGKTCRNKNLCKAIDH

Intron Amino Acid Position:

763

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

81.9

0.79

0.8

81.9

Major PPT

75.5

0.57

0.9

72.4

37.3

Minor 5ss

37.8

-1.4

2.7

46.1

Minor BPS

55.8

0.26

1.6

69.41

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035971

139254171 - 139335360

81190