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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139269610_139273910_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139269610 - 139273910
Intron Length:
4301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGACTATTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATCACATTAAAT
Flanking Amino Acid:
VLRQDGKTCRSKDICKSVNH
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
61.6
0.26
1.1
55.1
44.7
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
57.2
0.31
1.8
74.12
41.9

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000025829
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190