Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139274034 - 139274243

Intron Length:

210

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

AAATTATTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

AAAATCTAAATT

Flanking Amino Acid:

VLREDEKTCKSKDICRSVNH

Intron Amino Acid Position:

440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

81.2

26.2

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

64.7

0.33

55.9

43.7

Minor 5ss

42.2

-0.9

2.8

52.8

38.5

Minor BPS

50.8

0.1

1.7

64.84

39.6

Associated Gene:

Gene:

MATN2

Ensembl Gene ID:

ENSAPLG00000014019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040671

139254171 - 139335360

81190

ENSAPLT00000014656

139254171 - 139300283

46113

ENSAPLT00000025829

139254171 - 139335360

81190

ENSAPLT00000040029

139254171 - 139335360

81190

ENSAPLT00000025401

139254171 - 139335360

81190

ENSAPLT00000020971

139254171 - 139335360

81190

ENSAPLT00000035971

139254171 - 139335360

81190

ENSAPLT00000045349

139254171 - 139335360

81190

ENSAPLT00000019094

139254171 - 139335360

81190

ENSAPLT00000031224

139254171 - 139335360

81190

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139274034_139274243_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: