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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139274367_139274934_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139274367 - 139274934
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTAAAGT
Flanking Amino Acid:
LLREDGKTCRNKDVCNSVDH
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
49.6
0.05
1.9
68.84
42.9

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040029
139254171 - 139335360
81190