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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139274581_139274934_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139274581 - 139274934
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CAACTATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGTGCTTTAACC
Flanking Amino Acid:
LLREDGKTCRNKDICSSVAH
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
69.4
0.44
0.9
65.8
39.4
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
75.1
0.77
1.3
78.83
36.8

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190