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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_139275058_139275209_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139275058 - 139275209
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GAATCATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATATCTGAATC
Flanking Amino Acid:
ILREDGKTCRRQDICKSVSH
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
100
1.24
0.5
100
0
Major PPT
65.3
0.34
1
54.9
44.3
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
61.4
0.34
1.4
69.1
35.9

Associated Gene:

Gene:
MATN2
Ensembl Gene ID:
ENSAPLG00000014019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019094
139254171 - 139335360
81190
ENSAPLT00000035971
139254171 - 139335360
81190
ENSAPLT00000014656
139254171 - 139300283
46113
ENSAPLT00000031224
139254171 - 139335360
81190
ENSAPLT00000045349
139254171 - 139335360
81190
ENSAPLT00000025401
139254171 - 139335360
81190
ENSAPLT00000040671
139254171 - 139335360
81190
ENSAPLT00000020971
139254171 - 139335360
81190
ENSAPLT00000040029
139254171 - 139335360
81190